Nonstop flights from New York to San Juan

4 airlines fly from 3 New York airports (JFK, EWR and LGA) to San Juan (SJU), with up to 18 flights a day.

JFKSJU

Routes

3 airport pairs

JFK to SJUJohn F. Kennedy to Luis Munoz Marin10 to 11 a day
EWR to SJUNewark Liberty to Luis Munoz Marin6 a day
LGA to SJULaGuardia to Luis Munoz Marin1 a week

When they leave

New York time

5:01a9:55pFirst departure 5:01 AM, last 9:55 PM

Eight in the morning, 5:01 AM to 11:00 AM, then three in the afternoon, 12:00 PM to 12:41 PM, then six in the evening, 5:29 PM to 9:55 PM.

Every flight

Earliest first

5:01 AM→8:47 AMJFK to SJUJetBlueAirbus A320Daily
6:00 AM→9:58 AMEWR to SJUJetBlueAirbus A320Daily
7:00 AM→10:54 AMJFK to SJUJetBlueAirbus A320Mon, Fri, Sat
8:00 AM→12:04 PMEWR to SJUUnited AirlinesBoeing 767Daily
8:00 AM→12:08 PMJFK to SJUDelta Air LinesAirbus A321neoDaily
8:29 AM→12:27 PMJFK to SJUJetBlueAirbus A321Daily
9:46 AM→1:45 PMEWR to SJUUnited AirlinesBoeing 737 MAX 9Daily
9:59 AM→2:07 PMJFK to SJUJetBlueAirbus A321Daily
11:00 AM→2:57 PMEWR to SJUJetBlueAirbus A320Daily
12:00 PM→3:59 PMJFK to SJUJetBlueAirbus A320Daily
12:40 PM→4:33 PMJFK to SJUDelta Air LinesAirbus A321neoDaily
12:41 PM→5:58 PMLGA to SJUFrontier AirlinesDec 19 to Jan 2, 2027Airbus A320neoSat
5:29 PM→9:39 PMJFK to SJUJetBlueAirbus A220-300Daily
6:29 PM→10:45 PMJFK to SJUJetBlueAirbus A321Daily
7:28 PM→11:52 PMJFK to SJUDelta Air LinesAirbus A321neoDaily
7:45 PM→11:50 PMEWR to SJUUnited AirlinesBoeing 737 MAX 9Daily
8:00 PM→12:13 AM⁺¹JFK to SJUJetBlueAirbus A321Daily
9:55 PM→2:00 AM⁺¹EWR to SJUJetBlueAirbus A320Daily

Schedules last checked Sep 19, 2026. Times are local.

Flying from New York to San Juan

JetBlue flies most often, 10 to 11 times a day on the Airbus A320, Airbus A321 and Airbus A220-300. Delta Air Lines flies 3 times a day on the Airbus A321neo. United Airlines flies 3 times a day on the Boeing 737 MAX 9 and Boeing 767. Frontier Airlines flies on Saturdays with the Airbus A320neo.

Flights run every day of the week, from 16 on Tuesdays, Wednesdays, Thursdays and Sundays to 18 on Saturdays. The first arrival in San Juan is at 8:47 AM and the last at 2:00 AM the next day.

JFK to SJU is the busiest airport pair, with 73 flights a week, then EWR to SJU with 42 and LGA to SJU with 1.

On LGA to SJU, Frontier Airlines flies it from Dec 19 to Jan 2, 2027.

Flying back, San Juan to New York has 116 nonstop flights a week.

Return flights

San Juan to New YorkView

Find the cheapest day to fly from New York to San Juan.

Schedules as of Oct 9, 2026.